STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107815073Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family. (412 aa)    
Predicted Functional Partners:
LOC107769154
Monocopper oxidase-like protein SKU5.
      
 0.529
LOC107769699
Monocopper oxidase-like protein SKU5.
      
 0.529
LOC107778303
Monocopper oxidase-like protein SKU5.
      
 0.529
LOC107787287
Monocopper oxidase-like protein SKU5.
      
 0.529
LOC107802473
Hypersensitive-induced response protein 1.
   
  
 0.529
LOC107794391
Monocopper oxidase-like protein SKU5 isoform X1.
      
 0.525
LOC107805343
Monocopper oxidase-like protein SKU5.
      
 0.525
LOC107807992
Monocopper oxidase-like protein SKU5.
      
 0.525
LOC107816226
Monocopper oxidase-like protein SKU5.
      
 0.525
LOC107792571
Calmodulin-like.
   
  
 0.424
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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