LOC107816036 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107816036

Trihelix transcription factor ASIL2-like. (244 aa)

Predicted Functional Partners:

LOC107831777

0.517

LOC107772308

0.514

LOC107820554

0.469

LOC107815834

0.468

LOC107800170

0.462

LOC107767275

0.461

LOC107766025

0.454

LOC107820952

0.448

LOC107799058

0.439

LOC107800762

0.439

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107766025	LOC107772308	A0A1S3XJR4	A0A1S3Y4X3	Peroxidase 3-like.	Peroxidase 27-like.	0.468
LOC107766025	LOC107816036	A0A1S3XJR4	A0A1S4C7H1	Peroxidase 3-like.	Trihelix transcription factor ASIL2-like.	0.454
LOC107766025	LOC107831777	A0A1S3XJR4	A0A1S4DNP5	Peroxidase 3-like.	Peroxidase 27-like.	0.452
LOC107767275	LOC107772308	A0A1S3XPV8	A0A1S3Y4X3	Peroxidase 2-like.	Peroxidase 27-like.	0.495
LOC107767275	LOC107816036	A0A1S3XPV8	A0A1S4C7H1	Peroxidase 2-like.	Trihelix transcription factor ASIL2-like.	0.461
LOC107767275	LOC107831777	A0A1S3XPV8	A0A1S4DNP5	Peroxidase 2-like.	Peroxidase 27-like.	0.495
LOC107772308	LOC107766025	A0A1S3Y4X3	A0A1S3XJR4	Peroxidase 27-like.	Peroxidase 3-like.	0.468
LOC107772308	LOC107767275	A0A1S3Y4X3	A0A1S3XPV8	Peroxidase 27-like.	Peroxidase 2-like.	0.495
LOC107772308	LOC107800170	A0A1S3Y4X3	A0A1S4AQN7	Peroxidase 27-like.	Peroxidase 39-like.	0.460
LOC107772308	LOC107816036	A0A1S3Y4X3	A0A1S4C7H1	Peroxidase 27-like.	Trihelix transcription factor ASIL2-like.	0.514
LOC107772308	LOC107820554	A0A1S3Y4X3	A0A1S4CMU8	Peroxidase 27-like.	Peroxidase 3-like.	0.473
LOC107799058	LOC107816036	A0A1S4ALS2	A0A1S4C7H1	B3 domain-containing transcription repressor VAL1-like.	Trihelix transcription factor ASIL2-like.	0.439
LOC107800170	LOC107772308	A0A1S4AQN7	A0A1S3Y4X3	Peroxidase 39-like.	Peroxidase 27-like.	0.460
LOC107800170	LOC107816036	A0A1S4AQN7	A0A1S4C7H1	Peroxidase 39-like.	Trihelix transcription factor ASIL2-like.	0.462
LOC107800170	LOC107831777	A0A1S4AQN7	A0A1S4DNP5	Peroxidase 39-like.	Peroxidase 27-like.	0.445
LOC107800762	LOC107816036	A0A1S4ASE3	A0A1S4C7H1	Cyclin-dependent kinase inhibitor; Belongs to the CDI family. ICK/KRP subfamily.	Trihelix transcription factor ASIL2-like.	0.439
LOC107815834	LOC107816036	A0A1S4C749	A0A1S4C7H1	Cyclin-dependent kinase inhibitor; Belongs to the CDI family. ICK/KRP subfamily.	Trihelix transcription factor ASIL2-like.	0.468
LOC107816036	LOC107766025	A0A1S4C7H1	A0A1S3XJR4	Trihelix transcription factor ASIL2-like.	Peroxidase 3-like.	0.454
LOC107816036	LOC107767275	A0A1S4C7H1	A0A1S3XPV8	Trihelix transcription factor ASIL2-like.	Peroxidase 2-like.	0.461
LOC107816036	LOC107772308	A0A1S4C7H1	A0A1S3Y4X3	Trihelix transcription factor ASIL2-like.	Peroxidase 27-like.	0.514