STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107816053Uncharacterized protein LOC107816053. (607 aa)    
Predicted Functional Partners:
LOC107829266
Protein ROOT PRIMORDIUM DEFECTIVE 1-like.
  
  
 0.738
LOC107820321
Pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like.
  
   
 0.643
LOC107830880
Pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like.
  
   
 0.640
LOC107764837
Uncharacterized protein LOC107764837.
   
  
 0.540
LOC107764930
Uncharacterized protein LOC107764930.
   
  
 0.540
LOC107786946
Uncharacterized protein LOC107786946.
   
  
 0.540
LOC107820166
Uncharacterized protein LOC107820166 isoform X1.
  
    0.539
LOC107815079
Uncharacterized protein LOC107815079.
  
    0.538
LOC107787983
Protein ROOT PRIMORDIUM DEFECTIVE 1-like.
  
     0.528
LOC107793461
DNA-binding protein S1FA-like.
      
 0.528
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (14%) [HD]