STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107816369GTPase HflX-like. (546 aa)    
Predicted Functional Partners:
LOC107787791
50S ribosomal protein L19, chloroplastic-like.
   
 
 0.813
LOC107800535
50S ribosomal protein L19, chloroplastic-like.
   
 
 0.813
LOC107802091
50S ribosomal protein L19-like.
   
 
 0.813
LOC107830578
39S ribosomal protein L19, mitochondrial-like.
   
 
 0.813
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.800
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.800
LOC107770476
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.800
LOC107778595
50S ribosomal protein L33-like.
    
   0.800
LOC107789461
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.800
LOC107797264
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.800
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.