STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107816427Uncharacterized protein LOC107816427. (218 aa)    
Predicted Functional Partners:
LOC107781738
Pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like isoform X1.
  
     0.512
LOC107792966
Protein disulfide-isomerase SCO2-like.
  
     0.509
LOC107782461
Uncharacterized protein LOC107782461.
  
     0.508
LOC107785767
Pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like.
  
     0.507
LOC107811176
LOB domain-containing protein 41-like.
  
     0.506
LOC107799348
LOB domain-containing protein 40-like.
  
     0.505
LOC107761005
NAC domain-containing protein 83-like.
  
     0.501
LOC107773768
Uncharacterized protein LOC107773768.
  
     0.500
LOC107796695
FRIGIDA-like protein; Belongs to the Frigida family.
  
 
 
 0.500
LOC107809768
Uncharacterized protein LOC107809768.
  
     0.499
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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