STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107816457Uncharacterized protein LOC107816457. (584 aa)    
Predicted Functional Partners:
LOC107789019
UPF0503 protein At3g09070, chloroplastic-like.
  
    0.571
LOC107782953
UPF0503 protein At3g09070, chloroplastic-like.
  
    0.568
LOC107785701
UPF0503 protein At3g09070, chloroplastic-like isoform X1.
  
    0.556
LOC107811433
UPF0503 protein At3g09070, chloroplastic-like isoform X1.
  
    0.554
LOC107765033
Uncharacterized protein LOC107765033.
  
    0.541
LOC107809488
Uncharacterized protein LOC107809488.
  
    0.541
LOC107832682
Uncharacterized protein LOC107832682.
  
    0.540
LOC107759086
Uncharacterized protein LOC107759086.
  
    0.536
LOC107776950
Uncharacterized protein LOC107776950 isoform X1.
  
     0.534
LOC107796146
Uncharacterized protein LOC107796146 isoform X1.
  
     0.532
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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