STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107817685Protein DGCR14-like. (516 aa)    
Predicted Functional Partners:
LOC107810212
Protein FRA10AC1-like.
    
 
 0.796
LOC107763122
pre-mRNA-splicing factor SYF1-like.
   
 
 0.655
LOC107819808
pre-mRNA-splicing factor SYF1-like.
   
 
 0.655
LOC107764234
pre-mRNA-processing factor 19-like isoform X1.
    
 
 0.597
LOC107769884
pre-mRNA-processing factor 19 homolog 1-like.
    
 
 0.597
LOC107775142
pre-mRNA-processing factor 19 homolog 1-like.
    
 
 0.597
LOC107808480
pre-mRNA-processing factor 19-like isoform X1.
    
 
 0.597
LOC107823415
Protein RTF2 homolog.
  
   
 0.591
LOC107829585
WD repeat-containing protein 70.
      
 0.557
LOC107774413
U2 small nuclear ribonucleoprotein A'-like.
    
   0.528
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.