STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107818098Histone deacetylase complex subunit SAP18-like. (156 aa)    
Predicted Functional Partners:
LOC107780879
Uncharacterized protein LOC107780879 isoform X1.
   
 0.995
LOC107787584
Uncharacterized protein LOC107787584.
   
 0.995
LOC107807454
Uncharacterized protein LOC107807454 isoform X1.
   
 0.995
LOC107825767
Uncharacterized protein LOC107825767 isoform X1.
   
 0.995
LOC107764057
Pinin-like.
    
 0.991
LOC107768853
Pinin-like.
    
 0.991
LOC107803145
Pinin-like.
    
 0.991
LOC107765050
Serine/arginine-rich splicing factor SR45-like.
    
 0.937
LOC107827654
Serine/arginine-rich splicing factor SR45-like.
    
 0.937
LOC107766555
Polyadenylate-binding protein 2-like.
   
 0.888
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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