STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107818911Putative F-box/LRR-repeat protein At3g28410 isoform X1. (349 aa)    
Predicted Functional Partners:
LOC107831344
Putative late blight resistance protein homolog R1B-17.
  
     0.517
LOC107819212
UPF0481 protein At3g47200-like.
  
     0.493
LOC107777845
Uncharacterized protein LOC107777845.
  
 
   0.490
LOC107766777
LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1.
  
 
   0.488
LOC107776119
Uncharacterized protein LOC107776119.
  
     0.484
LOC107812743
Probable inactive histone-lysine N-methyltransferase SUVR2.
  
   0.484
LOC107802139
Uncharacterized protein LOC107802139 isoform X1.
  
     0.480
LOC107788702
Disease resistance protein RGA2-like; Belongs to the disease resistance NB-LRR family.
  
     0.479
LOC107829010
F-box/FBD/LRR-repeat protein At1g13570-like.
  
     0.478
LOC107787971
Uncharacterized protein LOC107787971.
  
 
   0.473
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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