STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107818941Pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like. (518 aa)    
Predicted Functional Partners:
LOC107796093
peptidyl-tRNA hydrolase, mitochondrial-like.
      
 0.546
LOC107778491
Pentatricopeptide repeat-containing protein At1g06270-like.
      
 0.459
LOC107831857
Pentatricopeptide repeat-containing protein At1g06270-like.
      
 0.459
LOC107780504
Cold-inducible RNA-binding protein-like.
    
 
 0.448
LOC107817915
Cold-inducible RNA-binding protein-like.
    
 
 0.448
LOC107790378
Protein NLRC3.
      
 0.441
LOC107815254
Protein NLRC3-like.
      
 0.441
LOC107818594
Uncharacterized protein LOC107818594.
      
 0.441
LOC107804426
Uncharacterized protein LOC107804426.
      
 0.433
LOC107813004
Uncharacterized protein LOC107813004.
      
 0.433
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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