STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107818914Protein misato homolog 1-like. (571 aa)    
Predicted Functional Partners:
LOC107786589
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
      
 0.537
LOC107786766
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
      
 0.537
LOC107827399
Probable manganese-transporting ATPase PDR2.
      
 0.537
rps19
Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.
      
 0.508
rps19-2
Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.
      
 0.508
LOC107759531
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.508
LOC107777020
Ribosomal protein S19, mitochondrial-like; Belongs to the universal ribosomal protein uS19 family.
      
 0.508
LOC107802509
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.508
LOC107761004
Mitochondrial import inner membrane translocase subunit TIM8-like; Belongs to the small Tim family.
      
 0.491
LOC107794232
Mitochondrial import inner membrane translocase subunit TIM8-like; Belongs to the small Tim family.
      
 0.491
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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