STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107820155UPF0676 protein C1494.01-like isoform X1; Belongs to the iron/ascorbate-dependent oxidoreductase family. (517 aa)    
Predicted Functional Partners:
LOC107769474
WD repeat-containing protein 26-like isoform X1.
      
 0.626
LOC107768408
Ras-related protein RABA1f-like.
   
  
 0.625
LOC107773672
Ras-related protein RABA1f-like.
   
  
 0.625
LOC107784040
Ras-related protein RABA1f-like.
   
  
 0.625
LOC107786160
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
      
 0.625
LOC107792495
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
      
 0.625
LOC107800383
Ras-related protein RABA1f-like.
   
  
 0.625
LOC107804346
Ras-related protein RABA1f-like.
   
  
 0.625
LOC107804300
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
      
 0.625
LOC107820003
Ras-related protein RABA1f-like.
   
  
 0.625
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.