STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107820791RING-type E3 ubiquitin transferase. (1486 aa)    
Predicted Functional Partners:
LOC107760504
Mitotic spindle checkpoint protein MAD2 isoform X1.
   
 0.758
LOC107764094
Mitotic spindle checkpoint protein MAD2-like.
   
 0.758
LOC107762879
LRR receptor-like serine/threonine-protein kinase HSL2; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
   
 0.727
LOC107762878
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.727
LOC107765765
Uncharacterized protein LOC107765765.
   
 0.727
LOC107767174
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.727
LOC107773530
Uncharacterized protein LOC107773530.
   
 0.727
LOC107773558
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.
   
 0.727
LOC107774291
LRR receptor-like serine/threonine-protein kinase HSL2; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
   
 0.727
LOC107788415
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.727
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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