LOC107822103 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107822103

Transmembrane emp24 domain-containing protein p24delta3-like. (218 aa)

Predicted Functional Partners:

LOC107774815

0.838

LOC107800409

0.838

LOC107832723

0.838

LOC107762587

0.833

LOC107765597

0.833

LOC107795464

0.833

LOC107808905

0.833

LOC107776105

0.824

LOC107787713

0.824

LOC107791678

0.824

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107762587	LOC107822103	A0A1S3X9J7	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.833
LOC107765597	LOC107822103	A0A1S3XIK3	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.833
LOC107774815	LOC107822103	A0A1S3YCU5	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta3-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.838
LOC107776105	LOC107822103	A0A1S3YGR8	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.824
LOC107787713	LOC107822103	A0A1S3ZKH4	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like isoform X1.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.824
LOC107791678	LOC107822103	A0A1S3ZY49	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.824
LOC107795464	LOC107822103	A0A1S4AAI0	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.833
LOC107800409	LOC107822103	A0A1S4AQN0	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta3-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.838
LOC107808905	LOC107822103	A0A1S4BJB6	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta2-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.833
LOC107822103	LOC107762587	A0A1S4CSU7	A0A1S3X9J7	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like.	0.833
LOC107822103	LOC107765597	A0A1S4CSU7	A0A1S3XIK3	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like.	0.833
LOC107822103	LOC107774815	A0A1S4CSU7	A0A1S3YCU5	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta3-like.	0.838
LOC107822103	LOC107776105	A0A1S4CSU7	A0A1S3YGR8	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like.	0.824
LOC107822103	LOC107787713	A0A1S4CSU7	A0A1S3ZKH4	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like isoform X1.	0.824
LOC107822103	LOC107791678	A0A1S4CSU7	A0A1S3ZY49	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like.	0.824
LOC107822103	LOC107795464	A0A1S4CSU7	A0A1S4AAI0	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like.	0.833
LOC107822103	LOC107800409	A0A1S4CSU7	A0A1S4AQN0	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta3-like.	0.838
LOC107822103	LOC107808905	A0A1S4CSU7	A0A1S4BJB6	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta2-like.	0.833
LOC107822103	LOC107832723	A0A1S4CSU7	A0A1S4DRL0	Transmembrane emp24 domain-containing protein p24delta3-like.	Transmembrane emp24 domain-containing protein p24beta3-like.	0.838
LOC107832723	LOC107822103	A0A1S4DRL0	A0A1S4CSU7	Transmembrane emp24 domain-containing protein p24beta3-like.	Transmembrane emp24 domain-containing protein p24delta3-like.	0.838