STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107822396Secoisolariciresinol dehydrogenase-like isoform X1. (263 aa)    
Predicted Functional Partners:
LOC107792811
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
   
 
 0.695
LOC107794251
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
   
 
 0.695
LOC107762659
Malonyl CoA-acyl carrier protein transacylase-like.
  
 
 0.485
LOC107822543
Malonyl CoA-acyl carrier protein transacylase-like.
  
 
 0.485
LOC107760944
Putative acyl-activating enzyme 19 isoform X1.
  
 0.478
LOC107807467
Putative acyl-activating enzyme 19 isoform X1.
  
 0.478
LOC107810489
Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.473
LOC107774748
Very-long-chain 3-oxoacyl-CoA reductase 1-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.446
LOC107802666
Very-long-chain 3-oxoacyl-CoA reductase 1-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.437
LOC107790734
3-dehydrosphinganine reductase TSC10A-like isoform X2.
  
 
 
 0.436
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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