STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107822412187-kDa microtubule-associated protein AIR9-like. (1739 aa)    
Predicted Functional Partners:
LOC107773908
Protein trichome birefringence-like 8.
   
 
 0.602
LOC107784863
Type 1 phosphatases regulator ypi1-like.
    
 
 0.602
LOC107805686
Type 1 phosphatases regulator ypi1-like.
    
 
 0.602
LOC107821525
Type 1 phosphatases regulator ypi1-like.
    
 
 0.602
LOC107824586
Type 1 phosphatases regulator ypi1-like.
    
 
 0.602
LOC107771889
Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.546
LOC107778555
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.546
LOC107821617
Phragmoplast orienting kinesin-1 isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.541
LOC107783858
Uncharacterized protein LOC107783858.
    
 0.539
LOC107823642
Protein CROWDED NUCLEI 2-like.
  
 
  0.529
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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