STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10782566754S ribosomal protein L34, mitochondrial-like. (144 aa)    
Predicted Functional Partners:
LOC107790927
Uncharacterized protein LOC107790927.
   
   0.978
LOC107765301
54S ribosomal protein L51, mitochondrial-like isoform X1.
   
 
 0.968
LOC107808930
54S ribosomal protein L51, mitochondrial-like isoform X1.
   
 
 0.968
rps14
Ribosomal protein S14.
   
 
 0.961
rps14-2
Ribosomal protein S14.
   
 
 0.961
LOC107802510
Ribosomal protein S14, mitochondrial.
   
 
 0.961
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.954
LOC107770476
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.954
LOC107797264
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.954
rps12
Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.948
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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