STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107825791annotation not available (437 aa)    
Predicted Functional Partners:
LOC107825653
UDP-N-acetylmuramate--L-alanine ligase-like.
 
  
 0.918
LOC107826838
UDP-N-acetylmuramate--L-alanine ligase-like.
 
  
 0.918
LOC107793075
annotation not available
  
  
 
0.900
LOC107777924
UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like.
  
 
 0.899
LOC107801615
UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like.
  
 
 0.899
LOC107825868
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like.
 
 0.798
LOC107778530
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like.
 
 0.797
LOC107797459
UDP-N-acetylenolpyruvoylglucosamine reductase-like.
  
 
 0.665
LOC107816995
UDP-N-acetylenolpyruvoylglucosamine reductase-like isoform X1.
  
 
 0.665
LOC107762997
Dolichyl-phosphate beta-glucosyltransferase-like.
     
 0.543
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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