STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107826902Chromo domain protein LHP1-like. (401 aa)    
Predicted Functional Partners:
NtCENH3-2
Histone H3-like centromeric protein HTR12.
    
 0.711
LOC107791532
Histone-lysine N-methyltransferase SUVR5-like.
    
 0.621
LOC107813524
Histone-lysine N-methyltransferase SUVR5-like.
    
 0.621
LOC107806534
Uncharacterized protein LOC107806534.
   
 0.619
LOC107824739
WD-40 repeat-containing protein MSI1.
   
 0.619
LOC107777823
Putative E3 ubiquitin-protein ligase RING1a isoform X1.
    
 0.591
LOC107792781
Putative E3 ubiquitin-protein ligase RING1a.
    
 0.591
LOC107798106
Putative E3 ubiquitin-protein ligase RING1a isoform X1.
    
 0.591
LOC107830473
Putative E3 ubiquitin-protein ligase RING1a.
    
 0.591
LOC107799058
B3 domain-containing transcription repressor VAL1-like.
      
 0.547
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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