STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107827021Transcription factor bHLH79-like. (168 aa)    
Predicted Functional Partners:
LOC107774540
Adagio protein 3-like.
      
 0.555
LOC107783380
Adagio protein 3-like.
      
 0.555
LOC107780646
Two-component response regulator-like APRR9 isoform X1.
    
 
 0.547
LOC107801908
Two-component response regulator-like APRR3 isoform X1.
    
 
 0.547
LOC107802108
Two-component response regulator-like APRR5 isoform X1.
    
 
 0.547
LOC107806932
Two-component response regulator-like APRR5 isoform X1.
    
 
 0.547
LOC107788465
Protein ULTRAPETALA 1-like.
  
     0.538
LOC107808482
Putative UPF0481 protein At3g02645.
  
     0.538
LOC107821442
Protein ULTRAPETALA 1-like.
  
     0.538
LOC107788170
Histidine kinase CKI1-like.
  
 
 
 0.537
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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