STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107827971Uncharacterized protein LOC107827971. (125 aa)    
Predicted Functional Partners:
LOC107766392
Uncharacterized protein LOC107766392.
  
     0.522
LOC107778135
Uncharacterized protein LOC107778135.
  
     0.504
LOC107807550
Uncharacterized protein LOC107807550.
  
     0.495
LOC107825909
Protein NYNRIN-like.
  
     0.492
LOC107804025
Uncharacterized protein LOC107804025.
  
     0.486
LOC107827836
Uncharacterized protein LOC107827836.
  
     0.484
LOC107793644
Uncharacterized protein LOC107793644.
  
     0.481
LOC107770004
Uncharacterized protein LOC107770004.
  
     0.476
LOC107814251
Uncharacterized protein LOC107814251.
  
     0.475
LOC107761472
Uncharacterized protein LOC107761472.
  
     0.463
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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