STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107827961Protein KRI1 homolog. (637 aa)    
Predicted Functional Partners:
LOC107779317
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.977
LOC107791487
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.977
LOC107777096
Ribosome biogenesis protein BMS1 homolog.
   
 
 0.872
LOC107788226
Ribosome biogenesis protein BMS1 homolog.
   
 
 0.872
LOC107769426
Nucleolar complex protein 2 homolog isoform X1.
   
 
 0.868
LOC107772222
Nucleolar complex protein 2 homolog isoform X1.
   
 
 0.868
LOC107790269
Nucleolar complex protein 2 homolog isoform X1.
   
 
 0.868
LOC107791930
Nucleolar complex protein 2 homolog isoform X1.
   
 
 0.868
LOC107769830
Periodic tryptophan protein 2 homolog.
   
 
 0.864
LOC107832193
Periodic tryptophan protein 2 homolog.
   
 
 0.864
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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