STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107828612Uncharacterized protein LOC107828612 isoform X1. (757 aa)    
Predicted Functional Partners:
LOC107808368
Uncharacterized protein LOC107808368 isoform X1.
  
  0.569
LOC107826048
Uncharacterized protein LOC107826048.
  
  0.567
LOC107767067
Uncharacterized protein LOC107767067 isoform X1.
  
  0.562
LOC107824051
Pheophytinase, chloroplastic-like.
    
 0.562
LOC107827246
Pheophytinase, chloroplastic-like.
    
 0.562
LOC107760873
Zinc-regulated protein 8-like.
  
     0.536
LOC107774220
Zinc-regulated protein 8-like.
  
     0.534
LOC107768390
RHOMBOID-like protein 9, chloroplastic.
      
 0.530
LOC107820731
RHOMBOID-like protein 9, chloroplastic isoform X1.
      
 0.530
LOC107785029
Ankyrin repeat-containing protein At5g02620-like isoform X1.
  
   
0.529
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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