LOC107828786 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107828786

Cytochrome b561 domain-containing protein At2g30890-like. (253 aa)

Predicted Functional Partners:

LOC107771801

0.634

LOC107796513

0.634

LOC107775595

0.610

LOC107789156

0.610

LOC107813713

0.610

rps2

0.592

LOC107790927

0.591

LOC107770348

0.549

LOC107812456

0.549

LOC107796706

0.548

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107770348	LOC107771801	A0A1S3XZK5	A0A1S3Y3E8	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	54S ribosomal protein L24, mitochondrial-like.	0.951
LOC107770348	LOC107775595	A0A1S3XZK5	A0A1S3YF85	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L46, mitochondrial-like.	0.942
LOC107770348	LOC107789156	A0A1S3XZK5	A0A1S3ZPV6	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L46, mitochondrial-like.	0.942
LOC107770348	LOC107790927	A0A1S3XZK5	A0A1S3ZVG7	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein LOC107790927.	0.958
LOC107770348	LOC107796513	A0A1S3XZK5	A0A1S4ADS6	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	54S ribosomal protein L24, mitochondrial-like.	0.951
LOC107770348	LOC107796706	A0A1S3XZK5	A0A1S4AEC4	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	54S ribosomal protein L34, mitochondrial-like.	0.937
LOC107770348	LOC107812456	A0A1S3XZK5	A0A1S4BW49	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein LOC107812456; Belongs to the universal ribosomal protein uS5 family.	0.543
LOC107770348	LOC107813713	A0A1S3XZK5	A0A1S4C0C6	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L46, mitochondrial-like.	0.942
LOC107770348	LOC107828786	A0A1S3XZK5	A0A1S4DDZ9	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	Cytochrome b561 domain-containing protein At2g30890-like.	0.549
LOC107770348	rps2	A0A1S3XZK5	A0A140G1Q1	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.997
LOC107771801	LOC107770348	A0A1S3Y3E8	A0A1S3XZK5	54S ribosomal protein L24, mitochondrial-like.	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	0.951
LOC107771801	LOC107775595	A0A1S3Y3E8	A0A1S3YF85	54S ribosomal protein L24, mitochondrial-like.	39S ribosomal protein L46, mitochondrial-like.	0.931
LOC107771801	LOC107789156	A0A1S3Y3E8	A0A1S3ZPV6	54S ribosomal protein L24, mitochondrial-like.	39S ribosomal protein L46, mitochondrial-like.	0.931
LOC107771801	LOC107790927	A0A1S3Y3E8	A0A1S3ZVG7	54S ribosomal protein L24, mitochondrial-like.	Uncharacterized protein LOC107790927.	0.954
LOC107771801	LOC107796513	A0A1S3Y3E8	A0A1S4ADS6	54S ribosomal protein L24, mitochondrial-like.	54S ribosomal protein L24, mitochondrial-like.	0.900
LOC107771801	LOC107796706	A0A1S3Y3E8	A0A1S4AEC4	54S ribosomal protein L24, mitochondrial-like.	54S ribosomal protein L34, mitochondrial-like.	0.941
LOC107771801	LOC107812456	A0A1S3Y3E8	A0A1S4BW49	54S ribosomal protein L24, mitochondrial-like.	Uncharacterized protein LOC107812456; Belongs to the universal ribosomal protein uS5 family.	0.951
LOC107771801	LOC107813713	A0A1S3Y3E8	A0A1S4C0C6	54S ribosomal protein L24, mitochondrial-like.	39S ribosomal protein L46, mitochondrial-like.	0.931
LOC107771801	LOC107828786	A0A1S3Y3E8	A0A1S4DDZ9	54S ribosomal protein L24, mitochondrial-like.	Cytochrome b561 domain-containing protein At2g30890-like.	0.634
LOC107771801	rps2	A0A1S3Y3E8	A0A140G1Q1	54S ribosomal protein L24, mitochondrial-like.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.983