STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107829001Uncharacterized protein LOC107829001. (422 aa)    
Predicted Functional Partners:
LOC107823917
Uncharacterized protein LOC107823917.
  
     0.494
LOC107811198
Uncharacterized protein LOC107811198.
  
     0.493
LOC107832807
Uncharacterized protein LOC107832807.
  
     0.490
LOC107789056
NF-X1-type zinc finger protein NFXL2-like.
  
     0.477
LOC107815096
50S ribosomal protein 5, chloroplastic-like.
  
     0.475
LOC107810784
Uncharacterized protein LOC107810784.
  
     0.472
LOC107766930
Uncharacterized protein LOC107766930.
  
     0.470
LOC107813656
Uncharacterized protein LOC107813656 isoform X1.
  
     0.468
LOC107815879
Uncharacterized protein LOC107815879 isoform X1.
  
     0.468
LOC107769143
50S ribosomal protein 5 alpha, chloroplastic-like.
  
     0.467
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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