STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107829236Pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like. (676 aa)    
Predicted Functional Partners:
LOC107830514
Trimethylguanosine synthase-like.
      
 0.551
LOC107832327
Trimethylguanosine synthase-like.
      
 0.551
LOC107782655
Probable amino-acid racemase.
      
 0.544
LOC107793211
Probable amino-acid racemase.
      
 0.544
LOC107764850
Uncharacterized protein LOC107764850.
   
  
 0.447
LOC107796276
Uncharacterized protein LOC107796276 isoform X1.
   
  
 0.447
LOC107824042
WD repeat-containing protein 6-like.
   
  
 0.447
LOC107815875
Pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like isoform X1.
  
     0.407
LOC107816207
Pentatricopeptide repeat-containing protein At1g76280-like isoform X1.
  
     0.405
LOC107796249
Pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like isoform X1.
  
     0.402
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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