STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107830825Katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1. (125 aa)    
Predicted Functional Partners:
LOC107766815
Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.683
LOC107767825
Katanin p60 ATPase-containing subunit A-like 2.
   
 
 0.683
LOC107780568
Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.683
LOC107799024
Katanin p60 ATPase-containing subunit A-like 2.
   
 
 0.683
LOC107803103
Katanin p60 ATPase-containing subunit A-like 2 isoform X1.
   
 
 0.683
LOC107812925
Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.683
LOC107824004
Katanin p60 ATPase-containing subunit A-like 2.
   
 
 0.683
LOC107825935
Katanin p60 ATPase-containing subunit A-like 2 isoform X1.
   
 
 0.683
LOC107826498
Katanin p60 ATPase-containing subunit A1-like; Belongs to the AAA ATPase family.
   
 
 0.683
LOC107830472
Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.683
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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