STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107831806Vacuolar protein sorting-associated protein 35A-like. (105 aa)    
Predicted Functional Partners:
LOC107795417
Vacuolar protein sorting-associated protein 26A.
   
 0.988
LOC107828108
Vacuolar protein sorting-associated protein 26A-like.
   
 0.988
LOC107826883
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 0.981
LOC107829646
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 0.981
LOC107775296
Uncharacterized protein LOC107775296.
   
 
 0.738
LOC107830608
Uncharacterized protein LOC107830608.
   
 
 0.738
LOC107789546
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
  
  
  0.687
LOC107787720
Photosystem II stability/assembly factor HCF136, chloroplastic-like isoform X1.
    
 
 0.675
LOC107830733
Photosystem II stability/assembly factor HCF136, chloroplastic-like.
    
 
 0.675
LOC107761199
Vacuolar protein sorting-associated protein 35B-like.
  
  
 
0.545
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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