STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107831675Protein tesmin/TSO1-like CXC 6 isoform X1. (611 aa)    
Predicted Functional Partners:
LOC107761272
Protein ALWAYS EARLY 3-like isoform X1.
   
 0.804
LOC107808192
Protein ALWAYS EARLY 3-like.
   
 0.804
LOC107810296
Protein ALWAYS EARLY 3-like.
   
 0.804
LOC107810295
Protein ALWAYS EARLY 3-like.
   
 0.804
LOC107770785
Transcription factor-like protein DPB isoform X1; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.
   
 0.745
LOC107804732
Transcription factor-like protein DPB isoform X1; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.
   
 0.745
LOC107777437
Retinoblastoma-related protein 1 isoform X1.
   
 0.741
LOC107801954
Retinoblastoma-related protein 1-like.
   
 0.741
RB1
Retinoblastoma-related protein 1; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity); Belongs to the retinoblastoma protein (RB) family.
   
 0.741
LOC107759085
WD-40 repeat-containing protein MSI4-like.
   
 0.689
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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