STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107832532HD domain-containing protein 2-like. (274 aa)    
Predicted Functional Partners:
LOC107760672
Inosine-5'-monophosphate dehydrogenase 2-like.
    
  0.685
LOC107775294
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.
    
  0.685
LOC107764471
Nudix hydrolase 19, chloroplastic-like.
    
  0.652
LOC107769046
Nudix hydrolase 19, chloroplastic-like.
    
  0.652
LOC107813369
Nudix hydrolase 23, chloroplastic-like isoform X1.
    
  0.652
LOC107829675
Nudix hydrolase 23, chloroplastic-like isoform X1.
    
  0.652
LOC107775069
Methyltransferase-like protein 5 isoform X1.
   
    0.625
LOC107797895
Methyltransferase-like protein 5 isoform X1.
   
    0.625
LOC107764534
tRNA-specific adenosine deaminase-like.
   
 
  0.465
LOC107770633
Riboflavin biosynthesis protein PYRR, chloroplastic-like.
   
 
  0.465
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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