STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107832817Transport inhibitor response 1-like protein. (623 aa)    
Predicted Functional Partners:
LOC107759671
Scarecrow-like protein 15; Belongs to the GRAS family.
      
 0.550
LOC107769694
Scarecrow-like protein 15; Belongs to the GRAS family.
      
 0.550
LOC107826703
Protein CUP-SHAPED COTYLEDON 2-like.
  
 
 
 0.539
LOC107800137
Protein CUP-SHAPED COTYLEDON 2-like.
  
 
 
 0.538
LOC107772271
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
      
 0.501
LOC107830915
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
      
 0.501
LOC107821864
Regulatory protein NPR1-like.
  
 
 0.494
LOC107786219
MFP1 attachment factor 1-like.
  
     0.488
LOC107788999
MFP1 attachment factor 1-like.
  
     0.488
LOC107820808
F-box/kelch-repeat protein SKIP11-like.
  
  
 0.485
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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