STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107819427Cytochrome P450 CYP82E4v2 nicotine demethylase; Belongs to the cytochrome P450 family. (517 aa)    
Predicted Functional Partners:
BBLa
Berberine bridge enzyme-like protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.
      
 0.700
LOC107831580
Reticuline oxidase-like; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.
      
 0.697
LOC107807126
Amine oxidase.
      
 0.630
PMT2
Putrescine N-methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. Putrescine methyltransferase family.
      
 0.625
LOC107829122
Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic-like.
   
  
 0.536
LOC107829123
Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic-like isoform X1.
   
  
 0.534
LOC107820078
Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic-like.
   
  
 0.533
LOC107808167
DNA helicase; Belongs to the MCM family.
      
 0.525
LOC107799426
Putrescine N-methyltransferase 2.
      
 0.522
T440
Berberine bridge enzyme like protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.
      
 0.520
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.