STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMGP00000001621Ribonucleoprotein, PTB-binding 1. (305 aa)    
Predicted Functional Partners:
ENSPMGP00000028025
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.847
ENSPMGP00000010065
Heterogeneous nuclear ribonucleoprotein K.
   
 0.747
ENSPMGP00000002929
Mitochondrial ribosomal protein L4.
   
 
 0.654
ENSPMGP00000023023
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.648
ENSPMGP00000029626
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
  0.644
ENSPMGP00000028770
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.642
ENSPMGP00000012654
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.617
ENSPMGP00000015986
EWS RNA-binding protein 1b.
   
  0.617
ENSPMGP00000017441
Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.
   
  0.617
ENSPMGP00000008471
RALY heterogeneous nuclear ribonucleoprotein.
    
 0.599
Your Current Organism:
Periophthalmus magnuspinnatus
NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.