ENSPMGP00000001774 protein (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMGP00000001774

Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)

Predicted Functional Partners:

ENSPMGP00000009238

0.979

ENSPMGP00000010765

0.979

ENSPMGP00000007005

0.977

ENSPMGP00000015317

0.973

ENSPMGP00000015409

0.971

ENSPMGP00000014704

0.962

ENSPMGP00000005360

0.957

ENSPMGP00000026176

0.957

ENSPMGP00000026179

0.957

ENSPMGP00000022877

0.955

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000001774	ENSPMGP00000005360	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Small nuclear ribonucleoprotein Sm D3.	0.957
ENSPMGP00000001774	ENSPMGP00000007005	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Zinc finger, matrin-type 2.	0.977
ENSPMGP00000001774	ENSPMGP00000009238	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Elongation factor Tu GTP binding domain containing 2.	0.979
ENSPMGP00000001774	ENSPMGP00000010765	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.979
ENSPMGP00000001774	ENSPMGP00000014704	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.962
ENSPMGP00000001774	ENSPMGP00000015317	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Small nuclear ribonucleoprotein G.	0.973
ENSPMGP00000001774	ENSPMGP00000015409	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Coiled-coil domain containing 84.	0.971
ENSPMGP00000001774	ENSPMGP00000022877	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.955
ENSPMGP00000001774	ENSPMGP00000026176	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	MPN domain-containing protein.	0.957
ENSPMGP00000001774	ENSPMGP00000026179	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Uncharacterized protein.	0.957
ENSPMGP00000005360	ENSPMGP00000001774	Small nuclear ribonucleoprotein Sm D3.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.957
ENSPMGP00000005360	ENSPMGP00000007005	Small nuclear ribonucleoprotein Sm D3.	Zinc finger, matrin-type 2.	0.922
ENSPMGP00000005360	ENSPMGP00000009238	Small nuclear ribonucleoprotein Sm D3.	Elongation factor Tu GTP binding domain containing 2.	0.983
ENSPMGP00000005360	ENSPMGP00000010765	Small nuclear ribonucleoprotein Sm D3.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.987
ENSPMGP00000005360	ENSPMGP00000014704	Small nuclear ribonucleoprotein Sm D3.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.952
ENSPMGP00000005360	ENSPMGP00000015317	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.999
ENSPMGP00000005360	ENSPMGP00000015409	Small nuclear ribonucleoprotein Sm D3.	Coiled-coil domain containing 84.	0.780
ENSPMGP00000005360	ENSPMGP00000022877	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.983
ENSPMGP00000005360	ENSPMGP00000026176	Small nuclear ribonucleoprotein Sm D3.	MPN domain-containing protein.	0.969
ENSPMGP00000005360	ENSPMGP00000026179	Small nuclear ribonucleoprotein Sm D3.	Uncharacterized protein.	0.969