STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMGP00000005876Decapping enzyme, scavenger. (336 aa)    
Predicted Functional Partners:
ENSPMGP00000003036
5'-3' exoribonuclease 1.
    
 
 0.708
ENSPMGP00000024920
Sulfite oxidase.
    
   0.662
ENSPMGP00000029478
Trehalase.
   
 
 0.654
ENSPMGP00000006937
Decapping mRNA 2.
   
  
 0.560
ENSPMGP00000022026
XRN_N domain-containing protein.
   
  
 0.557
NDOR1
NADPH-dependent diflavin oxidoreductase 1; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe/S cluster of CIAPIN1. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
      
 0.551
ENSPMGP00000026458
LSM12 homolog b.
      
 0.524
ENSPMGP00000008720
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
  
 0.490
ENSPMGP00000029294
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
      
 0.485
ENSPMGP00000010588
Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.
   
  
 0.477
Your Current Organism:
Periophthalmus magnuspinnatus
NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus
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