ENSPMGP00000006898 protein (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMGP00000006898

Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (280 aa)

Predicted Functional Partners:

ENSPMGP00000017455

0.937

ENSPMGP00000006293

0.871

ENSPMGP00000011371

0.870

ENSPMGP00000011368

0.855

ENSPMGP00000024491

0.850

ENSPMGP00000018321

0.810

ENSPMGP00000011779

0.809

ENSPMGP00000006528

0.734

ENSPMGP00000008773

0.728

ENSPMGP00000023701

0.711

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000006293	ENSPMGP00000006898	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.871
ENSPMGP00000006293	ENSPMGP00000008773	Asp-B-Hydro_N domain-containing protein.	Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.	0.656
ENSPMGP00000006293	ENSPMGP00000011368	Asp-B-Hydro_N domain-containing protein.	Asp-B-Hydro_N domain-containing protein.	0.821
ENSPMGP00000006293	ENSPMGP00000011371	Asp-B-Hydro_N domain-containing protein.	Asp_Arg_Hydrox domain-containing protein.	0.828
ENSPMGP00000006293	ENSPMGP00000011779	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.892
ENSPMGP00000006293	ENSPMGP00000017455	Asp-B-Hydro_N domain-containing protein.	Uncharacterized protein.	0.924
ENSPMGP00000006293	ENSPMGP00000018321	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.892
ENSPMGP00000006293	ENSPMGP00000024491	Asp-B-Hydro_N domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.871
ENSPMGP00000006528	ENSPMGP00000006898	Ig-like domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.734
ENSPMGP00000006528	ENSPMGP00000008773	Ig-like domain-containing protein.	Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.	0.725
ENSPMGP00000006528	ENSPMGP00000011779	Ig-like domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.734
ENSPMGP00000006528	ENSPMGP00000017455	Ig-like domain-containing protein.	Uncharacterized protein.	0.725
ENSPMGP00000006528	ENSPMGP00000018321	Ig-like domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.734
ENSPMGP00000006528	ENSPMGP00000024491	Ig-like domain-containing protein.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.734
ENSPMGP00000006898	ENSPMGP00000006293	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.871
ENSPMGP00000006898	ENSPMGP00000006528	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Ig-like domain-containing protein.	0.734
ENSPMGP00000006898	ENSPMGP00000008773	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.	0.728
ENSPMGP00000006898	ENSPMGP00000011368	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp-B-Hydro_N domain-containing protein.	0.855
ENSPMGP00000006898	ENSPMGP00000011371	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Asp_Arg_Hydrox domain-containing protein.	0.870
ENSPMGP00000006898	ENSPMGP00000011779	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.809