ENSPMGP00000006899 protein (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMGP00000006899

Solute carrier family 27 member 6. (616 aa)

Predicted Functional Partners:

ENSPMGP00000016297

0.868

ENSPMGP00000028099

0.867

ENSPMGP00000017294

0.866

ENSPMGP00000016735

0.849

ENSPMGP00000023335

0.848

ENSPMGP00000010908

0.844

ENSPMGP00000010909

0.844

ENSPMGP00000029357

0.844

ENSPMGP00000025553

0.697

ENSPMGP00000019080

0.696

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000006899	ENSPMGP00000010908	Solute carrier family 27 member 6.	SCP2 domain-containing protein.	0.844
ENSPMGP00000006899	ENSPMGP00000010909	Solute carrier family 27 member 6.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.844
ENSPMGP00000006899	ENSPMGP00000016297	Solute carrier family 27 member 6.	Bardet-Biedl syndrome 9.	0.868
ENSPMGP00000006899	ENSPMGP00000016735	Solute carrier family 27 member 6.	Bardet-Biedl syndrome 4.	0.849
ENSPMGP00000006899	ENSPMGP00000017294	Solute carrier family 27 member 6.	Bardet-Biedl syndrome 7.	0.866
ENSPMGP00000006899	ENSPMGP00000019080	Solute carrier family 27 member 6.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.696
ENSPMGP00000006899	ENSPMGP00000023335	Solute carrier family 27 member 6.	Tetratricopeptide repeat domain 8.	0.848
ENSPMGP00000006899	ENSPMGP00000025553	Solute carrier family 27 member 6.	Leucine zipper transcription factor-like 1.	0.697
ENSPMGP00000006899	ENSPMGP00000028099	Solute carrier family 27 member 6.	Bardet-Biedl syndrome 1.	0.867
ENSPMGP00000006899	ENSPMGP00000029357	Solute carrier family 27 member 6.	Sterol carrier protein 2b.	0.844
ENSPMGP00000010908	ENSPMGP00000006899	SCP2 domain-containing protein.	Solute carrier family 27 member 6.	0.844
ENSPMGP00000010908	ENSPMGP00000010909	SCP2 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.995
ENSPMGP00000010908	ENSPMGP00000029357	SCP2 domain-containing protein.	Sterol carrier protein 2b.	0.960
ENSPMGP00000010909	ENSPMGP00000006899	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Solute carrier family 27 member 6.	0.844
ENSPMGP00000010909	ENSPMGP00000010908	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SCP2 domain-containing protein.	0.995
ENSPMGP00000010909	ENSPMGP00000029357	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Sterol carrier protein 2b.	0.995
ENSPMGP00000016297	ENSPMGP00000006899	Bardet-Biedl syndrome 9.	Solute carrier family 27 member 6.	0.868
ENSPMGP00000016297	ENSPMGP00000016735	Bardet-Biedl syndrome 9.	Bardet-Biedl syndrome 4.	0.996
ENSPMGP00000016297	ENSPMGP00000017294	Bardet-Biedl syndrome 9.	Bardet-Biedl syndrome 7.	0.996
ENSPMGP00000016297	ENSPMGP00000019080	Bardet-Biedl syndrome 9.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.906