STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMGP00000013438tRNA pseudouridine synthase. (314 aa)    
Predicted Functional Partners:
ENSPMGP00000012362
TruB pseudouridine (psi) synthase family member 2.
  
 0.907
ENSPMGP00000023065
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.883
ENSPMGP00000000071
TruB pseudouridine (psi) synthase family member 1.
  
 0.864
ENSPMGP00000004848
Dyskeratosis congenita 1, dyskerin.
  
 0.855
ENSPMGP00000014779
RNA polymerase I and III subunit C.
  
  
 0.851
ENSPMGP00000026345
Polymerase (RNA) II (DNA directed) polypeptide C.
  
  
 0.851
ENSPMGP00000019424
Guanine monophosphate synthase.
  
 
  0.845
ENSPMGP00000028686
Methyltransferase like 15.
   
 
 0.845
ENSPMGP00000018297
RNA pseudouridine synthase domain containing 1.
  
  
 0.828
ENSPMGP00000017029
WD repeat domain 4.
   
 
 0.821
Your Current Organism:
Periophthalmus magnuspinnatus
NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.