STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMGP00000018838Family with sequence similarity 98 member B. (340 aa)    
Predicted Functional Partners:
ENSPMGP00000000852
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
    
 0.970
ENSPMGP00000006114
RNA transcription, translation and transport factor.
    
 0.970
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
    
 0.970
ENSPMGP00000012823
Si:dkeyp-118h3.6.
    
 0.955
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.881
ENSPMGP00000011696
Lysine (K)-specific demethylase 6A.
    
 0.778
ENSPMGP00000026628
Uncharacterized protein.
    
 0.778
ENSPMGP00000017792
Uncharacterized protein.
    
 0.699
ENSPMGP00000017795
RanBD1 domain-containing protein.
    
 0.699
ENSPMGP00000017802
Uncharacterized protein.
    
 0.699
Your Current Organism:
Periophthalmus magnuspinnatus
NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus
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