STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (263 aa)    
Predicted Functional Partners:
ENSPMGP00000021655
Pre-mRNA processing factor 19.
    
   0.939
ENSPMGP00000010218
Pleiotropic regulator 1.
    
   0.778
ENSPMGP00000001709
Uncharacterized protein.
    
   0.767
ENSPMGP00000007214
SNW domain containing 1.
    
 
 0.710
ENSPMGP00000009944
XPA binding protein 2.
    
 
 0.701
ENSPMGP00000009945
Uncharacterized protein.
    
 
 0.701
ENSPMGP00000017496
DUF1604 domain-containing protein.
    
   0.697
ENSPMGP00000013607
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
    
   0.675
DHX35
DEAH-box helicase 35.
    
   0.660
ENSPMGP00000016670
BCAS2 pre-mRNA processing factor.
    
   0.660
Your Current Organism:
Periophthalmus magnuspinnatus
NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.