ENSPMGP00000028197 protein (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMGP00000028197

Tudor domain containing 12. (978 aa)

Predicted Functional Partners:

PES1

0.905

ENSPMGP00000012898

0.848

ENSPMGP00000001530

0.840

WDR12

0.840

ENSPMGP00000018903

0.826

ENSPMGP00000019784

0.825

ENSPMGP00000009915

0.815

ENSPMGP00000026456

0.815

ENSPMGP00000012267

0.810

ENSPMGP00000002967

0.808

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMGP00000001530	ENSPMGP00000019784	ENSPMGP00000001530	ENSPMGP00000019784	Piwi domain-containing protein.	Drosha ribonuclease III.	0.586
ENSPMGP00000001530	ENSPMGP00000028197	ENSPMGP00000001530	ENSPMGP00000028197	Piwi domain-containing protein.	Tudor domain containing 12.	0.840
ENSPMGP00000002967	ENSPMGP00000009915	ENSPMGP00000002967	ENSPMGP00000009915	Mtr4 exosome RNA helicase.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.907
ENSPMGP00000002967	ENSPMGP00000012898	ENSPMGP00000002967	ENSPMGP00000012898	Mtr4 exosome RNA helicase.	EBNA1 binding protein 2.	0.834
ENSPMGP00000002967	ENSPMGP00000018903	ENSPMGP00000002967	ENSPMGP00000018903	Mtr4 exosome RNA helicase.	NOP58 ribonucleoprotein homolog (yeast).	0.985
ENSPMGP00000002967	ENSPMGP00000019784	ENSPMGP00000002967	ENSPMGP00000019784	Mtr4 exosome RNA helicase.	Drosha ribonuclease III.	0.537
ENSPMGP00000002967	ENSPMGP00000026456	ENSPMGP00000002967	ENSPMGP00000026456	Mtr4 exosome RNA helicase.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.907
ENSPMGP00000002967	ENSPMGP00000028197	ENSPMGP00000002967	ENSPMGP00000028197	Mtr4 exosome RNA helicase.	Tudor domain containing 12.	0.808
ENSPMGP00000002967	PES1	ENSPMGP00000002967	ENSPMGP00000023533	Mtr4 exosome RNA helicase.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.960
ENSPMGP00000002967	WDR12	ENSPMGP00000002967	ENSPMGP00000018931	Mtr4 exosome RNA helicase.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.795
ENSPMGP00000009915	ENSPMGP00000002967	ENSPMGP00000009915	ENSPMGP00000002967	Guanine nucleotide binding protein-like 3 (nucleolar).	Mtr4 exosome RNA helicase.	0.907
ENSPMGP00000009915	ENSPMGP00000012898	ENSPMGP00000009915	ENSPMGP00000012898	Guanine nucleotide binding protein-like 3 (nucleolar).	EBNA1 binding protein 2.	0.996
ENSPMGP00000009915	ENSPMGP00000018903	ENSPMGP00000009915	ENSPMGP00000018903	Guanine nucleotide binding protein-like 3 (nucleolar).	NOP58 ribonucleoprotein homolog (yeast).	0.943
ENSPMGP00000009915	ENSPMGP00000019784	ENSPMGP00000009915	ENSPMGP00000019784	Guanine nucleotide binding protein-like 3 (nucleolar).	Drosha ribonuclease III.	0.559
ENSPMGP00000009915	ENSPMGP00000026456	ENSPMGP00000009915	ENSPMGP00000026456	Guanine nucleotide binding protein-like 3 (nucleolar).	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.832
ENSPMGP00000009915	ENSPMGP00000028197	ENSPMGP00000009915	ENSPMGP00000028197	Guanine nucleotide binding protein-like 3 (nucleolar).	Tudor domain containing 12.	0.815
ENSPMGP00000009915	PES1	ENSPMGP00000009915	ENSPMGP00000023533	Guanine nucleotide binding protein-like 3 (nucleolar).	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
ENSPMGP00000009915	WDR12	ENSPMGP00000009915	ENSPMGP00000018931	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
ENSPMGP00000012267	ENSPMGP00000012898	ENSPMGP00000012267	ENSPMGP00000012898	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	EBNA1 binding protein 2.	0.809
ENSPMGP00000012267	ENSPMGP00000019784	ENSPMGP00000012267	ENSPMGP00000019784	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Drosha ribonuclease III.	0.416