ENSPMGP00000029249 protein (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMGP00000029249

Actin binding transcription modulator. (166 aa)

Predicted Functional Partners:

ENSPMGP00000019966

0.883

ENSPMGP00000019014

0.715

ENSPMGP00000029819

0.551

ENSPMGP00000025826

0.529

ENSPMGP00000002560

0.527

ENSPMGP00000029252

0.526

ENSPMGP00000001000

0.505

ENSPMGP00000029239

0.474

ENSPMGP00000029244

0.470

ENSPMGP00000012488

0.456

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000001000	ENSPMGP00000019014	Mitochondrial ribosomal protein S21.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.444
ENSPMGP00000001000	ENSPMGP00000029249	Mitochondrial ribosomal protein S21.	Actin binding transcription modulator.	0.505
ENSPMGP00000002560	ENSPMGP00000029249	Uncharacterized protein.	Actin binding transcription modulator.	0.527
ENSPMGP00000012488	ENSPMGP00000029249	SPRY domain containing 7b.	Actin binding transcription modulator.	0.456
ENSPMGP00000019014	ENSPMGP00000001000	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Mitochondrial ribosomal protein S21.	0.444
ENSPMGP00000019014	ENSPMGP00000029249	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Actin binding transcription modulator.	0.715
ENSPMGP00000019966	ENSPMGP00000029249	Pseudouridine synthase 10.	Actin binding transcription modulator.	0.883
ENSPMGP00000025826	ENSPMGP00000029249	Ferric-chelate reductase 1-like.	Actin binding transcription modulator.	0.529
ENSPMGP00000029239	ENSPMGP00000029249	Elongator acetyltransferase complex subunit 2.	Actin binding transcription modulator.	0.474
ENSPMGP00000029239	ENSPMGP00000029252	Elongator acetyltransferase complex subunit 2.	Src like adaptor 1a.	0.474
ENSPMGP00000029239	ENSPMGP00000029819	Elongator acetyltransferase complex subunit 2.	Nt_Gln_amidase domain-containing protein.	0.471
ENSPMGP00000029244	ENSPMGP00000029249	Catenin (cadherin-associated protein), alpha-like 1.	Actin binding transcription modulator.	0.470
ENSPMGP00000029244	ENSPMGP00000029252	Catenin (cadherin-associated protein), alpha-like 1.	Src like adaptor 1a.	0.499
ENSPMGP00000029244	ENSPMGP00000029819	Catenin (cadherin-associated protein), alpha-like 1.	Nt_Gln_amidase domain-containing protein.	0.444
ENSPMGP00000029249	ENSPMGP00000001000	Actin binding transcription modulator.	Mitochondrial ribosomal protein S21.	0.505
ENSPMGP00000029249	ENSPMGP00000002560	Actin binding transcription modulator.	Uncharacterized protein.	0.527
ENSPMGP00000029249	ENSPMGP00000012488	Actin binding transcription modulator.	SPRY domain containing 7b.	0.456
ENSPMGP00000029249	ENSPMGP00000019014	Actin binding transcription modulator.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.715
ENSPMGP00000029249	ENSPMGP00000019966	Actin binding transcription modulator.	Pseudouridine synthase 10.	0.883
ENSPMGP00000029249	ENSPMGP00000025826	Actin binding transcription modulator.	Ferric-chelate reductase 1-like.	0.529