STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z65_5745Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (223 aa)    
Predicted Functional Partners:
B9Z65_6332
PUA domain-containing protein.
  
 0.999
B9Z65_7365
Elongation factor 3.
   
   0.998
B9Z65_7859
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.998
B9Z65_3071
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.996
B9Z65_3912
Nucleolar protein 58.
   
 0.994
B9Z65_7769
Nop domain-containing protein.
   
 0.993
B9Z65_5988
Elongation factor 3.
   
   0.992
B9Z65_6912
TruB_N domain-containing protein.
  
 0.991
B9Z65_1830
H/ACA ribonucleoprotein complex subunit 3.
   
 0.990
B9Z65_2040
Uncharacterized protein.
   
 0.986
Your Current Organism:
Elsinoe australis
NCBI taxonomy Id: 40998
Other names: E. australis, Sphaceloma australis
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