STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z65_5958CTD kinase subunit beta; Belongs to the cyclin family. (579 aa)    
Predicted Functional Partners:
B9Z65_5611
CTD kinase subunit alpha.
    
 0.984
B9Z65_5094
CID domain-containing protein.
  
 
 0.959
B9Z65_6264
Protein kinase domain-containing protein.
    
 0.953
B9Z65_8520
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.842
B9Z65_3669
RNA polymerase II holoenzyme cyclin-like subunit; Belongs to the cyclin family.
     
 0.817
B9Z65_9087
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.809
B9Z65_164
Uncharacterized protein; Belongs to the cyclin family.
    
 0.808
B9Z65_3103
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.801
B9Z65_2887
Uncharacterized protein.
    
 0.796
B9Z65_4363
Transcription elongation factor S-II.
    
 0.777
Your Current Organism:
Elsinoe australis
NCBI taxonomy Id: 40998
Other names: E. australis, Sphaceloma australis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.