STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z65_5236Pre-rRNA-processing protein esf1. (731 aa)    
Predicted Functional Partners:
B9Z65_5569
RNA helicase.
   
 
 0.994
B9Z65_2508
Sas10 domain-containing protein.
   
 
 0.993
B9Z65_6052
Uncharacterized protein.
   
 
 0.990
B9Z65_5297
Uncharacterized protein.
   
 
 0.989
B9Z65_7716
U3 small nucleolar RNA-associated protein 22.
   
 
 0.987
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
   0.985
B9Z65_4896
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.980
B9Z65_3715
Pre-rRNA-processing protein ESF2.
   
 
 0.971
B9Z65_7818
Uncharacterized protein.
   
 
 0.968
B9Z65_6529
MI domain-containing protein.
   
   0.965
Your Current Organism:
Elsinoe australis
NCBI taxonomy Id: 40998
Other names: E. australis, Sphaceloma australis
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