STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macB_4Macrolide export ATP-binding/permease protein MacB. (76 aa)    
Predicted Functional Partners:
CUP33861.1
Acidobacterial duplicated orphan permease.
 
 0.958
CUP47105.1
ABC exporter transmembrane subunit%2C DevC protein.
 
 0.957
CUP14196.1
FtsX-like permease family.
 
   0.883
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
  0.715
CUP55105.1
Acidobacterial duplicated orphan permease.
 
   0.592
CUP58322.1
FtsX-like permease family.
 
   0.577
CUP14146.1
YcfA-like protein.
       0.561
CUP55089.1
Acidobacterial duplicated orphan permease.
 
   0.557
CUP27422.1
Outer membrane-specific lipoprotein transporter subunit LolE.
 
   0.519
CUP58304.1
Lipoprotein releasing system%2C transmembrane protein%2C LolC/E family.
 
   0.512
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.