Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUP03096.1 | CUP23658.1 | ERS852525_00413 | ERS852525_01112 | Flp pilus assembly protein%2C protease CpaA. | ComEC family competence protein. | 0.499 |
CUP03096.1 | comEA | ERS852525_00413 | ERS852525_01116 | Flp pilus assembly protein%2C protease CpaA. | ComE operon protein 1. | 0.617 |
CUP03096.1 | gspF | ERS852525_00413 | ERS852525_02035 | Flp pilus assembly protein%2C protease CpaA. | Type IV pilin biogenesis protein. | 0.656 |
CUP23630.1 | CUP23658.1 | ERS852525_01111 | ERS852525_01112 | DNA polymerase III subunit delta. | ComEC family competence protein. | 0.902 |
CUP23630.1 | CUP23685.1 | ERS852525_01111 | ERS852525_01113 | DNA polymerase III subunit delta. | Spore germination protein. | 0.864 |
CUP23630.1 | comEA | ERS852525_01111 | ERS852525_01116 | DNA polymerase III subunit delta. | ComE operon protein 1. | 0.782 |
CUP23630.1 | lepA | ERS852525_01111 | ERS852525_01110 | DNA polymerase III subunit delta. | Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.705 |
CUP23630.1 | senX3 | ERS852525_01111 | ERS852525_01114 | DNA polymerase III subunit delta. | Signal-transduction histidine kinase senX3. | 0.813 |
CUP23630.1 | yycF | ERS852525_01111 | ERS852525_01115 | DNA polymerase III subunit delta. | Transcriptional regulatory protein YycF. | 0.774 |
CUP23658.1 | CUP03096.1 | ERS852525_01112 | ERS852525_00413 | ComEC family competence protein. | Flp pilus assembly protein%2C protease CpaA. | 0.499 |
CUP23658.1 | CUP23630.1 | ERS852525_01112 | ERS852525_01111 | ComEC family competence protein. | DNA polymerase III subunit delta. | 0.902 |
CUP23658.1 | CUP23685.1 | ERS852525_01112 | ERS852525_01113 | ComEC family competence protein. | Spore germination protein. | 0.876 |
CUP23658.1 | comEA | ERS852525_01112 | ERS852525_01116 | ComEC family competence protein. | ComE operon protein 1. | 0.920 |
CUP23658.1 | gspF | ERS852525_01112 | ERS852525_02035 | ComEC family competence protein. | Type IV pilin biogenesis protein. | 0.625 |
CUP23658.1 | lepA | ERS852525_01112 | ERS852525_01110 | ComEC family competence protein. | Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.654 |
CUP23658.1 | recA | ERS852525_01112 | ERS852525_00401 | ComEC family competence protein. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.439 |
CUP23658.1 | senX3 | ERS852525_01112 | ERS852525_01114 | ComEC family competence protein. | Signal-transduction histidine kinase senX3. | 0.862 |
CUP23658.1 | yycF | ERS852525_01112 | ERS852525_01115 | ComEC family competence protein. | Transcriptional regulatory protein YycF. | 0.778 |
CUP23685.1 | CUP23630.1 | ERS852525_01113 | ERS852525_01111 | Spore germination protein. | DNA polymerase III subunit delta. | 0.864 |
CUP23685.1 | CUP23658.1 | ERS852525_01113 | ERS852525_01112 | Spore germination protein. | ComEC family competence protein. | 0.876 |
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