STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP45057.1Bacterial type II secretion system protein F domain. (437 aa)    
Predicted Functional Partners:
CUP45079.1
Flp pilus assembly protein TadB.
     0.971
CUP44986.1
Uncharacterised protein.
 
  
 0.960
CUP45109.1
Flp pilus assembly protein%2C ATPase CpaF.
 
  
 0.960
CUP45686.1
Flp pilus assembly protein%2C ATPase CpaE.
 
  
 0.951
CUP45005.1
Uncharacterised protein.
 
   
 0.937
CUP45029.1
Uncharacterised protein.
       0.820
ptlH
Pertussis toxin liberation protein H.
 
  
 0.806
CUP39443.1
Protein of uncharacterised function (DUF1292).
  
     0.751
CUP79948.1
Uncharacterised protein.
  
     0.750
CUP09734.1
Uncharacterised protein.
  
     0.748
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.