STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP52007.1Predicted outer membrane protein. (458 aa)    
Predicted Functional Partners:
CUP51983.1
Sortase (surface protein transpeptidase).
 
     0.893
CUP51951.1
Sortase (surface protein transpeptidase).
 
     0.881
CUO97429.1
Sortase (surface protein transpeptidase).
 
     0.775
CUP52032.1
Predicted outer membrane protein.
 
     0.759
sipW
Signal peptidase I W.
 
     0.574
CUP52064.1
Uncharacterised protein.
       0.504
CUP51939.1
Uncharacterised protein.
       0.439
CUP51906.1
Uncharacterised protein.
       0.424
CUP51896.1
Alternate signal-mediated exported protein%2C CPF_0494 family.
       0.416
CUP51834.1
Uncharacterised protein.
       0.407
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.