STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP60161.1Uncharacterised protein. (290 aa)    
Predicted Functional Partners:
CUP60133.1
Predicted membrane protein.
 
    0.939
CUP60114.1
Transcriptional regulator%2C Acidobacterial%2C PadR-family.
 
     0.876
CUP60184.1
DNA-binding transcriptional activator PspC.
  
  
 0.784
CUP49750.1
Domain of uncharacterised function (DUF3794).
  
 
   0.739
CUP79925.1
LysM domain/BON superfamily protein.
  
 
   0.729
CUP04464.1
Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.587
CUP18442.1
Uncharacterised protein.
  
     0.581
CUP18468.1
Uncharacterised protein.
  
     0.576
CUP01462.1
Uncharacterised protein.
  
     0.569
ompA
Outer membrane protein II.
    
   0.545
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
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